PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g086250.2
Common NameMTR_1g086250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SBP
Protein Properties Length: 812aa    MW: 90713.1 Da    PI: 5.5215
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g086250.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP43.68e-142314978
                     EEETTT--SS--S-STTTT-------S--- CS
              SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78
                     fh l+efDe+krsCrrrLa+hn+rrrk+++
  Medtr1g086250.2  2 FHILEEFDEGKRSCRRRLAGHNKRRRKTNQ 31
                     9**************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.409129IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.16E-10233IPR004333Transcription factor, SBP-box
PfamPF031104.7E-7228IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.202.8E-8551698IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.39E-9565697IPR020683Ankyrin repeat-containing domain
CDDcd002046.66E-8585696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MFHILEEFDE GKRSCRRRLA GHNKRRRKTN QEAVPNGSPT NDDQTSSYLL ISLLKILSNM  60
HSDRSDQPTD QDLLTHLLRS LASQNDEQGS KNLSNLLREQ ENLLREGGSS RNSGMVSALF  120
SNGSQGSPTV ITQHQPVSMN QMQQEMVHTH DVRTSDHQLI SSIKPSISNS PPAYSETRDS  180
SGQTKMNNFD LNDIYVDSDD GTEDLERLPV STNLATSSVD YPWTQQDSHQ SSPAQTSGNS  240
DSASAQSPSS SSGEAQSRTD RIVFKLFGKE PNEFPLVLRA QILDWLSQSP TDIESYIRPG  300
CIVLTIYLRQ AEAVWEELCC DLTSSLIKLL DVSDDTFWKT GWVHIRVQHQ MAFIFNGQVV  360
IDTSLPFRSN NYSKIWTVSP IAVPASKRAQ FSVKGVNLMR PATRLMCALE GKYLVCEDAH  420
ESTDQYSEEL DELQCIQFSC SVPVSNGRGF IEIEDQGLSS SFFPFIVAEE DVCTEIRVLE  480
PLLESSETDP DIEGTGKIKA KSQAMDFIHE MGWLLHRSQL KYRMVNLNSG VDLFPLQRFT  540
WLMEFSMDHD WCAVVKKLLN LLLDETVNKG DHPTLYQALS EMGLLHRAVR RNSKQLVELL  600
LRYVPDNTSD ELGPEDKALV GGKNHSYLFR PDAVGPAGLT PLHIAAGKDG SEDVLDALTN  660
DPCMVGIEAW KNARDSTGST PEDYARLRGH YTYIHLVQKK INKTQGAAHV VVEIPSNMTE  720
SNKNPKQNES FTSLEIGKAE VRRSQGNCKL CDTKISCRTA VGRSMVYRPA MLSMVAIAAV  780
CVCVALLFKS SPEVLYMFRP FRWESLDFGT S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.42330.0flower| leaf| pod| root| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469150.10.0squamosa promoter-binding-like protein
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A072VP280.0A0A072VP28_MEDTR; Squamosa promoter-binding-like protein
STRINGGLYMA10G01211.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]